Q-bank Plant Viruses

Help on BioloMICSNet

How to search our databases

The BioloMICSNet Software facilitates interogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( ) will allow you to customize the query.

The following link : BioloMICS Search will redirects you to the Search page

Similarity based on on-line pair-wise alignments

The BioloMICSNet Software facilitates identifications by the perfomance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirects you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification

The BioloMICSNet Software has facilitated perfomance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification :

The following link : BioloMICS Polyphasic Identification will redirects you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website

Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)

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Information details on Database : Q-bank Plant Viruses

Fields description for Layout : Plant Virus Database

Field Caption	Field Name	Field Code	Field type
Information on virus isolate
	Isolate	E246	E : Text, administrative field
	Latin name of host	E13	E : Text, administrative field
	Taxonomy host plant	RLink256	RLink : Link to one or more records
	English name of host	E14	E : Text, administrative field
	Dutch name of host	E15	E : Text, administrative field
	Cultivar	E16	E : Text, administrative field
	Symptoms	E17	E : Text, administrative field
	Latitude, longitude where found	L1	L : GIS Location (latitude, longitude, altitude, precision)
	City where found	E18	E : Text, administrative field
	Area where found	E20	E : Text, administrative field
	Country where found	E19	E : Text, administrative field
	Date found	E21	E : Text, administrative field
	Pictures of symptoms on original host	P7_Link	FLink : Link to File
	Remarks on isolate	E22	E : Text, administrative field
	Data contributed by	RLink700	RLink : Link to one or more records
	General species record	T699	T : Discrete data, single state
	Link to isolates	RLink704	RLink : Link to one or more records
	Q-status	T717	T : Discrete data, single state
	Link to phytosanitary status	RLink705	RLink : Link to one or more records
Taxonomy
	Genus	P1_7_RecLink	RLink : Link to one or more records
	Species	E10	E : Text, administrative field
	Species synonym(s)	E245	E : Text, administrative field
	Acronym	E11	E : Text, administrative field
	Species (Dutch)	E12	E : Text, administrative field
	Strain	E41	E : Text, administrative field

Links to other databases
	Link to other databases	U692	U : URL
Identification
Electron microscopy
	Picture of particle (EM)	P3_Link	FLink : Link to File
	Length of particle (nm)	S1	S : Continuous data range (Min,LP,HP,Max)
	Length of second particle (nm)	S253	S : Continuous data range (Min,LP,HP,Max)
	Length of third particle (nm)	S254	S : Continuous data range (Min,LP,HP,Max)
	Length of fourth particle (nm)	S255	S : Continuous data range (Min,LP,HP,Max)
	Diameter of particle (nm)	S3	S : Continuous data range (Min,LP,HP,Max)
	Staining	C5	C : Discrete data, multiple state
	Shape of particle	C6	C : Discrete data, multiple state
	Remarks on EM	E23	E : Text, administrative field
	Plant material analyzed for EM	E24	E : Text, administrative field
Test plant
	Pictures of symptoms on test plants	P5_Link	FLink : Link to File
	Test plants for local symptoms	C7	C : Discrete data, multiple state
	Cultivar test plants	E25	E : Text, administrative field
	Test plants for systemic symptoms	C8	C : Discrete data, multiple state
	Inoculation method	C9	C : Discrete data, multiple state
	Name of experimental vector	E26	E : Text, administrative field
	Remarks on inoculation	E27	E : Text, administrative field
	Description of local symptoms on test plants	E28	E : Text, administrative field
	Description of systemic symptoms on test plants	E29	E : Text, administrative field
Serology

	Plant material analyzed for serology	E30	E : Text, administrative field
Material tested Positive with following antisera
	Antisera, tested POSITIVE with	P194	RLink : Link to one or more records
Material tested (False) Negative with following antisera
	Antisera, tested (FALSE) NEGATIVE with	RLink195	RLink : Link to one or more records
	Remarks on serology	E31	E : Text, administrative field
Molecular identification
	Plant material for molecular analyses	E37	E : Text, administrative field
Used molecular methods
	Used molecular methods	RLink224	RLink : Link to one or more records
	Remarks on molecular analyses	E38	E : Text, administrative field
Antisera used for immuno capture
	Antiserum for IC	RLink225	RLink : Link to one or more records
Transmission
	Transmission type	C4	C : Discrete data, multiple state
Vector
	Name of vector	E39	E : Text, administrative field
	Type of vector	C10	C : Discrete data, multiple state
	Type of vector transmission	C11	C : Discrete data, multiple state
	Vector population available at	E40	E : Text, administrative field
	Picture of vector	P8_Link	FLink : Link to File
Sequences
	Genome sequence	N1	NLink : Link to Sequence
	Genbank Accession #	E2	E : Text, administrative field
	Position of fragment	E3	E : Text, administrative field
Collection
	Isolate	E246	E : Text, administrative field
	Isolate synonym(s)	E247	E : Text, administrative field
	Collection curator	RLink252	RLink : Link to one or more records
Bibliography
	Bibliography	B1	RLink : Link to one or more records

Examples of hyperlinks for Table Plant Virus Database in Database Q-bank Plant Viruses

Example 1: Record #2 [PVY], Display all Fields

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Plant Virus Database&Rec=2&Fields=All&ExactMatch=T

Example 2: Record Name is 'PVY' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Plant Virus Database&Name=PVY&Fields=All&ExactMatch=T

Example 3: Record Name containing 'PVY' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Plant Virus Database&Name=PVY&Fields=All&ExactMatch=F

Example 4: Record Name containing 'PPV_2002_006' , Display Field 'E246' (Isolate), Non Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Plant Virus Database&Name=PPV_2002_006&Fields=E246&ExactMatch=F

Example 5: Record Name is 'PPV_2002_006' , Display Field 'E246' (Isolate) and 'B1' (Bibliography) , Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Plant Virus Database&Name=PPV_2002_006&Fields=E246&Fields=B1&ExactMatch=T

Fields description for Layout : Genera of plant viruses and viroids

Field Name	Field Code	Field type
Picture morphology	FLink275	FLink : Link to File
Family	E3	E : Text, administrative field
Morphology	E4	E : Text, administrative field
Nature of genome	E5	E : Text, administrative field
Genome composition	E6	E : Text, administrative field
Genome size (kb)	E7	E : Text, administrative field
CP number	E8	E : Text, administrative field
CP sizes (kDa)	E9	E : Text, administrative field
Transmission	E10	E : Text, administrative field
Bibliography	B1	RLink : Link to one or more records

Examples of hyperlinks for Table Genera of plant viruses and viroids in Database Q-bank Plant Viruses

Example 1: Record #2 [Alfamovirus], Display all Fields

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Genera of plant viruses and viroids&Rec=2&Fields=All&ExactMatch=T

Example 2: Record Name is 'Alfamovirus' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Genera of plant viruses and viroids&Name=Alfamovirus&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Alfamovirus' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Genera of plant viruses and viroids&Name=Alfamovirus&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Benyvirus' , Display Field 'FLink275' (Picture morphology), Non Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Genera of plant viruses and viroids&Name=Benyvirus&Fields=FLink275&ExactMatch=F

Example 5: Record Name is 'Benyvirus' , Display Field 'FLink275' (Picture morphology) and 'B1' (Bibliography) , Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Genera of plant viruses and viroids&Name=Benyvirus&Fields=FLink275&Fields=B1&ExactMatch=T

Fields description for Layout : Particle morphology

Field Name	Field Code	Field type
Picture morphology	FLink274	FLink : Link to File
Morphology	E4	E : Text, administrative field
Family	E3	E : Text, administrative field
Nature of genome	E5	E : Text, administrative field
Genome composition	E6	E : Text, administrative field
Genome size (kb)	E7	E : Text, administrative field
CP number	E8	E : Text, administrative field
CP sizes (kDa)	E9	E : Text, administrative field
Bibliography	B1	RLink : Link to one or more records
Shape of particle	C259	C : Discrete data, multiple state
Length of particle (nm)	S260	S : Continuous data range (Min,LP,HP,Max)
Length of second particle (nm)	S261	S : Continuous data range (Min,LP,HP,Max)
Length of third particle (nm)	S262	S : Continuous data range (Min,LP,HP,Max)
Length of fourth particle (nm)	S263	S : Continuous data range (Min,LP,HP,Max)
Diameter of particle (nm)	S264	S : Continuous data range (Min,LP,HP,Max)

Examples of hyperlinks for Table Particle morphology in Database Q-bank Plant Viruses

Example 1: Record #1 [Alfamovirus], Display all Fields

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Particle morphology&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Alfamovirus' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Particle morphology&Name=Alfamovirus&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Alfamovirus' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Particle morphology&Name=Alfamovirus&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Benyvirus' , Display Field 'FLink274' (Picture morphology), Non Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Particle morphology&Name=Benyvirus&Fields=FLink274&ExactMatch=F

Example 5: Record Name is 'Benyvirus' , Display Field 'FLink274' (Picture morphology) and 'S264' (Diameter of particle (nm)) , Exact Match Searching

http://www.q-bank.eu/Virus/BioloMICS.aspx?Table=Particle morphology&Name=Benyvirus&Fields=FLink274&Fields=S264&ExactMatch=T

Contact(s) for Database : Q-bank Plant Viruses

The following link : BioloMICS Contact information will redirects you to the BioloMICS Contact information page

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