Q-bank Invasive Plants

Help on BioloMICSNet

How to search our databases

The BioloMICSNet Software facilitates interogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( ) will allow you to customize the query.

The following link : BioloMICS Search will redirects you to the Search page

Similarity based on on-line pair-wise alignments

The BioloMICSNet Software facilitates identifications by the perfomance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirects you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification

The BioloMICSNet Software has facilitated perfomance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification :

The following link : BioloMICS Polyphasic Identification will redirects you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website

Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)

Export database description
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Information details on Database : Q-bank Invasive Plants

Fields description for Layout : Bibliography

Field Name	Field Code	Field type
Authors	E1	E : Text, administrative field
Editors	E3	E : Text, administrative field
Year	H1	H : DateTime (YYYYMMDDHHmmss)
Page	E4	E : Text, administrative field
Collection	E5	E : Text, administrative field
ISBN	E6	E : Text, administrative field
Num_	E7	E : Text, administrative field
ISSN	E9	E : Text, administrative field
Volume	E10	E : Text, administrative field
Keywords	E11	E : Text, administrative field
Edit_Ref	E12	E : Text, administrative field
Revue	E13	E : Text, administrative field
Remarks	E14	E : Text, administrative field
Website	U771	U : URL
Journal	RLink334	RLink : Link to one or more records

Examples of hyperlinks for Table Bibliography in Database Q-bank Invasive Plants

Example 1: Record #12981 [Aquatische Neophyten in Nordrhein-Westfalen], Display all Fields

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Bibliography&Rec=12981&Fields=All&ExactMatch=T

Example 2: Record Name is 'Aquatische Neophyten in Nordrhein-Westfalen' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Bibliography&Name=Aquatische Neophyten in Nordrhein-Westfalen&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Aquatische' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Bibliography&Name=Aquatische&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Managing' , Display Field 'E1' (Authors), Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Bibliography&Name=Managing&Fields=E1&ExactMatch=F

Example 5: Record Name is 'Managing green waste to reduce weed spread - for local councils' , Display Field 'E1' (Authors) and 'RLink334' (Journal) , Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Bibliography&Name=Managing green waste to reduce weed spread - for local councils&Fields=E1&Fields=RLink334&ExactMatch=T

Fields description for Layout : Plants - Specimens

Field Caption	Field Name	Field Code	Field type
	Species	E70	E : Text, administrative field
	Family	E10	E : Text, administrative field
	Species Link	RLink811	RLink : Link to one or more records
	Category	C1	C : Discrete data, multiple state
	Type	T1	T : Discrete data, single state
	Type information	E28	E : Text, administrative field
	Dups	E3	E : Text, administrative field
	Subherbarium	E4	E : Text, administrative field
	Collector	E5	E : Text, administrative field
	Prefix	E6	E : Text, administrative field
	Number of collection	D1	D : Continuous data, single value
	Suffix	E7	E : Text, administrative field
	Additional collectors	E8	E : Text, administrative field
	Date of collection	E9	H : DateTime (YYYYMMDDHHmmss)
	Identified by	E16	E : Text, administrative field
	Date of identification	E17	H : DateTime (YYYYMMDDHHmmss)
	Continent of origin	E18	E : Text, administrative field
	Region of origin	E19	E : Text, administrative field
	Country	E20	E : Text, administrative field
	Major area	E21	E : Text, administrative field
	Minor area	E22	E : Text, administrative field
	Gazeteer	E23	E : Text, administrative field
	Locality notes	E24	E : Text, administrative field
	Cultivation notes	E25	E : Text, administrative field
	Latitude, longitude of collection	L1	L : GIS Location (latitude, longitude, altitude, precision)
	Altitude range (m)	S1	S : Continuous data range (Min,LP,HP,Max)
	Descriptive notes	E26	E : Text, administrative field
	Vernacular name	E27	E : Text, administrative field
	Habit	C3	C : Discrete data, multiple state
	Habitat notes	E29	E : Text, administrative field
	Presence of flowers	T3	T : Discrete data, single state
	Presence of fruit	T4	T : Discrete data, single state
	Barcode	E2	E : Text, administrative field
Sequences
	rbcL	NLink922	NLink : Link to Sequence
	DNA ITS	N3	NLink : Link to Sequence
	DNA trnH-psbA	N2	NLink : Link to Sequence
	DNA matK	N1	NLink : Link to Sequence

Examples of hyperlinks for Table Plants - Specimens in Database Q-bank Invasive Plants

Example 1: Record #95 [283288], Display all Fields

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Specimens&Rec=95&Fields=All&ExactMatch=T

Example 2: Record Name is '283288' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Specimens&Name=283288&Fields=All&ExactMatch=T

Example 3: Record Name containing '283288' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Specimens&Name=283288&Fields=All&ExactMatch=F

Example 4: Record Name containing '808442' , Display Field 'E70' (Species), Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Specimens&Name=808442&Fields=E70&ExactMatch=F

Example 5: Record Name is '808442' , Display Field 'E70' (Species) and 'N1' (DNA matK) , Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Specimens&Name=808442&Fields=E70&Fields=N1&ExactMatch=T

Fields description for Layout : Plants - Species

Field Caption	Field Name	Field Code	Field type
Taxonomy
	Family	E10	E : Text, administrative field
	Genus	E11	E : Text, administrative field
	Epitheton	E12	E : Text, administrative field
	Author(s)	E13	E : Text, administrative field
	Subspecies	E14	E : Text, administrative field
	Author(s) of subspecies	E15	E : Text, administrative field
	Rank	T2	T : Discrete data, single state
	Vernacular names	E67	E : Text, administrative field
	Synonyms	E68	E : Text, administrative field
	Misapplied names	E69	E : Text, administrative field
	IPNI link	RLink496	RLink : Link to one or more records
	Factsheet link	U812	U : URL
Bibliography
	Bibliography	B1	RLink : Link to one or more records
Morphology
Overall
	Height of plant (m)	S2	S : Continuous data range (Min,LP,HP,Max)
Roots and stem
	Diameter of stem (m)	S3	S : Continuous data range (Min,LP,HP,Max)
	Length of stem (m)	S4	S : Continuous data range (Min,LP,HP,Max)
	Description of subterranean parts	E36	E : Text, administrative field
	Description of stem	E37	E : Text, administrative field
Fruit and seeds
	Width of seed (mm)	S5	S : Continuous data range (Min,LP,HP,Max)
	Description of seed	E33	E : Text, administrative field
	Description of fruit	E44	E : Text, administrative field
	Length of fruit (mm)	S22	S : Continuous data range (Min,LP,HP,Max)
	Width of fruit (mm)	S23	S : Continuous data range (Min,LP,HP,Max)
	Length of seed (mm)	S25	S : Continuous data range (Min,LP,HP,Max)
Propagules
	Description of propagule	E34	E : Text, administrative field
	Number of propagules per plant	S24	S : Continuous data range (Min,LP,HP,Max)
	Description of seedling	E35	E : Text, administrative field
Leaf
	Description of leaf	E38	E : Text, administrative field
	Length of leaf (cm)	S6	S : Continuous data range (Min,LP,HP,Max)
	Width of leaf (cm)	S7	S : Continuous data range (Min,LP,HP,Max)
	Length of petiole (cm)	S8	S : Continuous data range (Min,LP,HP,Max)
	Phyllotaxy	C8	C : Discrete data, multiple state
Flower
	Description of inflorescence	E39	E : Text, administrative field
	Description of flower	E40	E : Text, administrative field
	Color of flower	C4	C : Discrete data, multiple state
	Length of sepal (mm)	S9	S : Continuous data range (Min,LP,HP,Max)
	Width of sepal (mm)	S10	S : Continuous data range (Min,LP,HP,Max)
	Length of petal (mm)	S11	S : Continuous data range (Min,LP,HP,Max)
	Width of petal (mm)	S12	S : Continuous data range (Min,LP,HP,Max)
	Length of tepal (mm)	S13	S : Continuous data range (Min,LP,HP,Max)
	Width of tepal (mm)	S14	S : Continuous data range (Min,LP,HP,Max)
	Number of stamens	S15	S : Continuous data range (Min,LP,HP,Max)
	Length of stamens (mm)	S16	S : Continuous data range (Min,LP,HP,Max)
	Description of stamens	E41	E : Text, administrative field
	Ratio of anther/filament length	S17	S : Continuous data range (Min,LP,HP,Max)
	Number of styles	S18	S : Continuous data range (Min,LP,HP,Max)
	Number of ovaries	S19	S : Continuous data range (Min,LP,HP,Max)
	Description of ovary	E42	E : Text, administrative field
	Length of styles (mm)	S20	S : Continuous data range (Min,LP,HP,Max)
	Number of stigmas	S21	S : Continuous data range (Min,LP,HP,Max)
	Description of stigmas	E43	E : Text, administrative field
Illustrations
	Illustrations	FLink354	FLink : Link to File
Additional information
	Uses	E30	E : Text, administrative field
	Similar species	E45	E : Text, administrative field
	Look-alike link	U833	U : URL
	Link to other websites_Url	P4_Url	U : URL
	Plant code - Bayer	E65	E : Text, administrative field
	Plant code - standard list	E66	E : Text, administrative field
Distribution information
	Original distribution	E31	E : Text, administrative field
	Current distribution	E32	E : Text, administrative field
	Field observations	LLink303	LLink : Link to location
	Distribution	FLink501	FLink : Link to File
Biochemistry and molecular data
	DNA matK	N1	NLink : Link to Sequence
	DNA trnH-psbA	N2	NLink : Link to Sequence
	DNA ITS	N3	NLink : Link to Sequence
	Ploidy	E46	E : Text, administrative field
	Biochemical information	E47	E : Text, administrative field
Ecology
	Life cycle	C5	C : Discrete data, multiple state
	Competitiveness	E48	E : Text, administrative field
	Flowering time in Europe	C6	C : Discrete data, multiple state
	Pollination characteristics	E49	E : Text, administrative field
	Hardiness	E50	E : Text, administrative field
	Dormancy	E51	E : Text, administrative field
	Habitat requirements	E52	E : Text, administrative field
	Ecological amplitude	E53	E : Text, administrative field
	Habitat elsewhere	E54	E : Text, administrative field
	Habitat in the Netherlands	E55	E : Text, administrative field
	Natural competitor(s)	E56	E : Text, administrative field
	Palatability	E57	E : Text, administrative field
	Dependency on other organisms	E58	E : Text, administrative field
Invasiveness, risk and control
	Dispersal mechanism	C7	C : Discrete data, multiple state
	Host, diseases and pest information	E59	E : Text, administrative field
	Invasive behavior information	E60	E : Text, administrative field
	Toxicity	E61	E : Text, administrative field
	Control	E62	E : Text, administrative field
	Pathway of introduction	E63	E : Text, administrative field
	Risk assessment for the Netherlands	E64	E : Text, administrative field

Examples of hyperlinks for Table Plants - Species in Database Q-bank Invasive Plants

Example 1: Record #28 [Egeria densa], Display all Fields

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Species&Rec=28&Fields=All&ExactMatch=T

Example 2: Record Name is 'Egeria densa' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Species&Name=Egeria densa&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Egeria' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Species&Name=Egeria&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Myriophyllum' , Display Field 'E10' (Family), Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Species&Name=Myriophyllum&Fields=E10&ExactMatch=F

Example 5: Record Name is 'Myriophyllum heterophyllum' , Display Field 'E10' (Family) and 'E64' (Risk assessment for the Netherlands) , Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants - Species&Name=Myriophyllum heterophyllum&Fields=E10&Fields=E64&ExactMatch=T

Fields description for Layout : Plants central

Field Name	Field Code	Field type
Genus	E355	E : Text, administrative field
Epitheton	E356	E : Text, administrative field
Higher rank	RLink357	RLink : Link to one or more records
Lower rank	RLink357_back	RLink : Link to one or more records
Invasive plant species	RLink496_back	RLink : Link to one or more records

Examples of hyperlinks for Table Plants central in Database Q-bank Invasive Plants

Example 1: Record #1 [Acanthaceae], Display all Fields

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants central&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Acanthaceae' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants central&Name=Acanthaceae&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Acanthaceae' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants central&Name=Acanthaceae&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Aextoxicaceae' , Display Field 'E355' (Genus), Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants central&Name=Aextoxicaceae&Fields=E355&ExactMatch=F

Example 5: Record Name is 'Aextoxicaceae' , Display Field 'E355' (Genus) and 'RLink496_back' (Invasive plant species) , Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Plants central&Name=Aextoxicaceae&Fields=E355&Fields=RLink496_back&ExactMatch=T

Fields description for Layout : Available_similar_species_page

Field Caption	Field Name	Field Code	Field type
	Look-alike link	U833	U : URL

Examples of hyperlinks for Table Available_similar_species_page in Database Q-bank Invasive Plants

Example 1: Record #28 [Egeria densa], Display all Fields

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Available_similar_species_page&Rec=28&Fields=All&ExactMatch=T

Example 2: Record Name is 'Egeria densa' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Available_similar_species_page&Name=Egeria densa&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Egeria' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Available_similar_species_page&Name=Egeria&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Myriophyllum' , Display Field 'U833' (Look-alike link), Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Available_similar_species_page&Name=Myriophyllum&Fields=U833&ExactMatch=F

Fields description for Layout : available factsheets

Field Caption	Field Name	Field Code	Field type
	Factsheet link	U812	U : URL

Examples of hyperlinks for Table available factsheets in Database Q-bank Invasive Plants

Example 1: Record #28 [Egeria densa], Display all Fields

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=available factsheets&Rec=28&Fields=All&ExactMatch=T

Example 2: Record Name is 'Egeria densa' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=available factsheets&Name=Egeria densa&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Egeria' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=available factsheets&Name=Egeria&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Myriophyllum' , Display Field 'U812' (Factsheet link), Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=available factsheets&Name=Myriophyllum&Fields=U812&ExactMatch=F

Fields description for Layout : Sequences

Field Name	Field Code	Field type
Sequence	N1_	N : Sequence (DNA or protein)
PCR primer forward	RLink908	RLink : Link to one or more records
PCR primer reverse	RLink909	RLink : Link to one or more records
Sequencing primer forward	RLink910	RLink : Link to one or more records
Sequencing primer reverse	RLink911	RLink : Link to one or more records
Loci	C912	C : Discrete data, multiple state
Trace files	FLink914	FLink : Link to File
Contig file	FLink915	FLink : Link to File
Genbank URL	U916	U : URL
Remarks	E917	E : Text, administrative field
Quality	C918	C : Discrete data, multiple state

Examples of hyperlinks for Table Sequences in Database Q-bank Invasive Plants

Example 1: Record #2 [Hydrocotyle ranunculoides JVV3276 trnH-psbA ], Display all Fields

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Sequences&Rec=2&Fields=All&ExactMatch=T

Example 2: Record Name is 'Hydrocotyle ranunculoides JVV3276 trnH-psbA ' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Sequences&Name=Hydrocotyle ranunculoides JVV3276 trnH-psbA &Fields=All&ExactMatch=T

Example 3: Record Name containing 'Hydrocotyle' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Sequences&Name=Hydrocotyle&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Hydrocotyle_ranunculoides_G-CabreraWalsh-July20-26trnH_17_2' , Display Field 'N1_' (Sequence), Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Sequences&Name=Hydrocotyle_ranunculoides_G-CabreraWalsh-July20-26trnH_17_2&Fields=N1_&ExactMatch=F

Example 5: Record Name is 'Hydrocotyle_ranunculoides_G-CabreraWalsh-July20-26trnH_17_2' , Display Field 'N1_' (Sequence) and 'C918' (Quality) , Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Sequences&Name=Hydrocotyle_ranunculoides_G-CabreraWalsh-July20-26trnH_17_2&Fields=N1_&Fields=C918&ExactMatch=T

Fields description for Layout : Primers

Field Name	Field Code	Field type
Region	Region_	E : Text, administrative field
Sequence 5'-3'	E919	E : Text, administrative field
References	RLink920	RLink : Link to one or more records
Remarks	E921	E : Text, administrative field

Examples of hyperlinks for Table Primers in Database Q-bank Invasive Plants

Example 1: Record #1 [Forward trnH-psbA ], Display all Fields

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Primers&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Forward trnH-psbA ' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Primers&Name=Forward trnH-psbA &Fields=All&ExactMatch=T

Example 3: Record Name containing 'Forward' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Primers&Name=Forward&Fields=All&ExactMatch=F

Example 4: Record Name containing 'trnH-psbA_1R' , Display Field 'Region_' (Region), Non Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Primers&Name=trnH-psbA_1R&Fields=Region_&ExactMatch=F

Example 5: Record Name is 'trnH-psbA_1R' , Display Field 'Region_' (Region) and 'E921' (Remarks) , Exact Match Searching

http://www.q-bank.eu/Plants/BioloMICS.aspx?Table=Primers&Name=trnH-psbA_1R&Fields=Region_&Fields=E921&ExactMatch=T

Contact(s) for Database : Q-bank Invasive Plants

The following link : BioloMICS Contact information will redirects you to the BioloMICS Contact information page

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