Q-bank Nematodes

Help on BioloMICSNet

How to search our databases

The BioloMICSNet Software facilitates interogation of the available databases. The Basic search allows you to search on any kind of field.

Should you need to build more complex queries, then the Advanced search ( ) will allow you to customize the query.

The following link : BioloMICS Search will redirects you to the Search page

Similarity based on on-line pair-wise alignments

The BioloMICSNet Software facilitates identifications by the perfomance of on-line pair-wise and probabilistic sequences (DNA and/or Proteins) identifications.

The following link : BioloMICS Sequence Pairwise Alignment will redirects you to the BioloMICS Sequence Pairwise Alignment page

Polyphasic online identification

The BioloMICSNet Software has facilitated perfomance of on-line polyphasic identifications since the first version produced in 1999. Depending on the databases and the criteria that are available, a wide range of characteristics can be entered, combined and analyzed to obtain an identification of an unknown. The more criteria used, the more likely the identification will be reliable. The current on-line version of the software also facilitates for the production of phenetic trees.

For a complete description on fields and algorithms used in the polyphasic identification :

The following link : BioloMICS Polyphasic Identification will redirects you to the BioloMICS Polyphasic Identification page

Deposit of user's data

BioloMICSNet users willing to deposit their data or to order items using the cart system, will have to register. We need to be able to contact the depositor/client For specific information (e.g. BioloMICSNet number, possible points of clarification, for example regarding the name, actual date of publication, etc), and we also need to ensure all entries are genuine.

To register for the first time follow the steps below:

1. Enter your email address (see Register New User), click on the 'Create New Profile' button to receive a provisional password by email (this is to make sure that the provided email is real and that you are the person that can open the given email).

2. Read your email and go to the Register menu again. Enter your email and password (obtained by email). Click on the "Login" button and access the BioloMICSNet profile form where personal information has to be entered. Change the password and personalize it. Click on the "Save profile" button. You will then be registered and ready to deposit new items (strains, species, etc) or to order items on-line via the Cart system.

Link your website

Software developers can connect their website to BioloMICSNet.

Basic address 1:
http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=V2&Descr=V3&Fields=V4&ExactMatch=V5

Basic address 2:
http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=V2&Rec=V6&Fields=V4&ExactMatch=V5

where,

V1: Database Name (see 'Database' block ' below) where to find the wanted record (see table below for more information)

V2: Table Layout Name (see 'Fields Code' block below) where to find the wanted record (see table below for more information)

V3: Name of the wanted record

V4: Fields code (see 'Fields code' below) to be displayed. To display all fields use the 'All' value (ex.: &Fields =All). To display only one field, just paste the code of the field next to the & Fields tag (ex.: &Fields =E1). To display several fields, use several & Fields tag (ex.: &Fields=E1&Fields=T4&Fields=P8). Only the fields that are not empty will be displayed. See table below for more information on fields codes.

V5: Exact match for the queries. Use T for true or F for False (ex.: &ExactMatch =T). Relevant if V3 (Name specified). 'ExactMatch=T' will search for record where Name equals the given value while 'ExactMatch=F' will search for records where Name contains the given value.

V6: Unique ID of a given record (ex.: &Rec =1)

Export database description
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Information details on Database : Q-bank Nematodes

Fields description for Layout : Taxonomy

Field Name	Field Code	Field type
Synonym of	RLink276	RLink : Link to one or more records
Parent relation taxon	RLink274	RLink : Link to one or more records
Children taxa	RLink274_back	RLink : Link to one or more records
Genus	E1	E : Text, administrative field
Subtaxon	E3	E : Text, administrative field
Species	E2	E : Text, administrative field
Authority and year	E4	E : Text, administrative field
Type	E7	E : Text, administrative field
Bibliography	E9	RLink : Link to one or more records
Remarks	E10	E : Text, administrative field
Status	T1	T : Discrete data, single state
Species details	RLink286	RLink : Link to one or more records

Examples of hyperlinks for Table Taxonomy in Database Q-bank Nematodes

Example 1: Record #1 [Tylenchoidea Örley 1880], Display all Fields

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Taxonomy&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'Tylenchoidea Örley 1880' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Taxonomy&Name=Tylenchoidea Örley 1880&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Tylenchoidea' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Taxonomy&Name=Tylenchoidea&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Tylenchus' , Display Field 'RLink276' (Synonym of), Non Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Taxonomy&Name=Tylenchus&Fields=RLink276&ExactMatch=F

Example 5: Record Name is 'Tylenchus martini Zell 1988' , Display Field 'RLink276' (Synonym of) and 'RLink286' (Species details) , Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Taxonomy&Name=Tylenchus martini Zell 1988&Fields=RLink276&Fields=RLink286&ExactMatch=T

Fields description for Layout : Species - website

Field Caption	Field Name	Field Code	Field type
General information
	Taxon name	E1	RLink : Link to one or more records
	link to WaNeCo	U771	U : URL
	English name	E334	E : Text, administrative field
	EU-status	T772	T : Discrete data, single state
	Remark on EU-status	E773	E : Text, administrative field
	EPPO-Status	T250	T : Discrete data, single state
	EPPO data:	U770	U : URL
Material available
	Availability in collection	C3	C : Discrete data, multiple state
	Species > Symptoms	P6_9_RecLink	RLink : Link to one or more records
	Species > Microplots	P9_12_RecLink	RLink : Link to one or more records
	Associated populations in greenhouse	RLink272_back	RLink : Link to one or more records
Additional information
	Picture	FLink768	FLink : Link to File
	Geography	E322	E : Text, administrative field
	Host range	E12	E : Text, administrative field
	Biology	E321	E : Text, administrative field
References
	Bibliography	B1	RLink : Link to one or more records
Identification
Morphology
juvenile
	body length	S716	S : Continuous data range (Min,LP,HP,Max)
	stylet length	S2	S : Continuous data range (Min,LP,HP,Max)
	tail length	S3	S : Continuous data range (Min,LP,HP,Max)
	DGO	S330	S : Continuous data range (Min,LP,HP,Max)
female
	body length f	D320	D : Continuous data, single value
	vulva position	S9	S : Continuous data range (Min,LP,HP,Max)
male
	Body length m	S766	S : Continuous data range (Min,LP,HP,Max)
	Spiculum length	S329	S : Continuous data range (Min,LP,HP,Max)
	gubernaculum length	S1	S : Continuous data range (Min,LP,HP,Max)
	Preferred key(s)	E6	E : Text, administrative field
	Key(s)	RLink205	RLink : Link to one or more records

Examples of hyperlinks for Table Species - website in Database Q-bank Nematodes

Example 1: Record #2 [Ditylenchus dipsaci], Display all Fields

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Species - website&Rec=2&Fields=All&ExactMatch=T

Example 2: Record Name is 'Ditylenchus dipsaci' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Species - website&Name=Ditylenchus dipsaci&Fields=All&ExactMatch=T

Example 3: Record Name containing 'Ditylenchus' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Species - website&Name=Ditylenchus&Fields=All&ExactMatch=F

Example 4: Record Name containing 'Aphelenchoides' , Display Field 'E1' (Taxon name), Non Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Species - website&Name=Aphelenchoides&Fields=E1&ExactMatch=F

Example 5: Record Name is 'Aphelenchoides subtenuis' , Display Field 'E1' (Taxon name) and 'RLink205' (Key(s)) , Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Species - website&Name=Aphelenchoides subtenuis&Fields=E1&Fields=RLink205&ExactMatch=T

Fields description for Layout : Populations

Field Caption	Field Name	Field Code	Field type
Taxonomy
	Taxonomy	E1	RLink : Link to one or more records
	Type material	T261	T : Discrete data, single state
	Reference material	T255	T : Discrete data, single state
	Availability in collection	C769	C : Discrete data, multiple state
Greenhouse administration
	Hostplant	E2	E : Text, administrative field
	Hostplant (Dutch name)	E303	E : Text, administrative field
	Species	E3	E : Text, administrative field
	Latest date of inoculation	E4	H : DateTime (YYYYMMDDHHmmss)
Remarks by inoculated population
	Collection entry date	E5	H : DateTime (YYYYMMDDHHmmss)
	Original hostplant	E6	E : Text, administrative field
	Locality	E258	E : Text, administrative field
	Country	E7	E : Text, administrative field
	Collector	E8	E : Text, administrative field
	Insitute	E260	E : Text, administrative field
	Identified by	E9	E : Text, administrative field
	Method of identification	T1	T : Discrete data, single state
	PhastSystem gel	F263	F : file
	Date of identification	E10	H : DateTime (YYYYMMDDHHmmss)
	Remarks by identification	E344	E : Text, administrative field
	Prisma number	E253	E : Text, administrative field
	Comments on origin	E302	E : Text, administrative field

Examples of hyperlinks for Table Populations in Database Q-bank Nematodes

Example 1: Record #1 [C2312], Display all Fields

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Populations&Rec=1&Fields=All&ExactMatch=T

Example 2: Record Name is 'C2312' , Display all Fields, Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Populations&Name=C2312&Fields=All&ExactMatch=T

Example 3: Record Name containing 'C2312' , Display all Fields, Non Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Populations&Name=C2312&Fields=All&ExactMatch=F

Example 4: Record Name containing 'C7720' , Display Field 'E1' (Taxonomy), Non Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Populations&Name=C7720&Fields=E1&ExactMatch=F

Example 5: Record Name is 'C7720' , Display Field 'E1' (Taxonomy) and 'E302' (Comments on origin) , Exact Match Searching

http://www.q-bank.eu/Nematodes/BioloMICS.aspx?Table=Populations&Name=C7720&Fields=E1&Fields=E302&ExactMatch=T

Contact(s) for Database : Q-bank Nematodes

The following link : BioloMICS Contact information will redirects you to the BioloMICS Contact information page

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BioAware makes no representation or warranty whatsoever regarding the performance, use or results of the software, including without limitation, any express or implied warranties, including without limitation, the implied warranties of merchant ability and fitness for a particular purpose. In no event shall BioAware be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including without limitation, procurement of substitute goods or services, loss of use, data, or profits, or business interruption) however caused and not withstanding any theory of liability, whether in contrast, strict liability, or tort (including negligence or otherwise) arising in any way out of the software, even if advised of the possibility or probality of such damage. BioAware shall beat no responsability for the accuracy or quality of information or other results (The Information) obtained through its provision of the software, nor the use or misuse of any information by any user of the information, unauthorized use of any information protected by intellectual property rights. The user acknowledges and agrees that BioAware is merely permitting access to the information supplied throught the software, and that the user is responsible for the accuracy, truthfulness and all other matters relating to such information. Further, the user acknowledges and agrees that the software is subject to interruption from time to time and the user's information may not be accessed by its intended user.