Q-bank Fungi Website
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    • EPPO and EU Council Directive species
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    • —————————————
    • List of all included species
    • List of all included strains
    • —————————————
    • Ceratocystis
    • Colletotrichum
    • Melampsora
    • Monilinia
    • Mycosphaerella and its anamorphs
    • Phoma and Phoma-like genera
    • Phyllosticta / Guignardia
    • Phytophthora
    • Puccinia
    • Stenocarpella
    • Thecaphora
    • Verticillium
  • Methodology
    • Molecular Decision Scheme
    • Included sequences
    • Primer list with details
    • —————————————
    • Ceratocystis
    • Colletotrichum
    • Melampsora
    • Monilinia
    • Mycosphaerella and its anamorphs
    • Phoma and Phoma-like genera
    • Phyllosticta / Guignardia
    • Phytophthora
    • Puccinia
    • Stenocarpella
    • Thecaphora
    • Verticillium
  • General search
    • All fungal species
    • All fungal strains
  • ID
    • Blast against all Q-bank sequences
    • Blast against all Q-bank fungal sequences
    • —————————————
    • Multilocus ID all fungal strains
    • Multilocus ID all fungal species
    • Multilocus sequence ID per group
      • Ceratocystis
      • Colletotrichum
      • Melampsora
      • Monilinia
      • Mycosphaerella and its anamorphs
      • Phoma and Phoma-like genera
      • Phyllosticta / Guignardia
      • Phytophthora
      • Puccinia
      • Stenocarpella
      • Thecaphora
      • Verticillium
    • —————————————
    • External identification keys for other fungi
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Q-bank Fungal Website
  • Methodology
  • Molecular Decision Scheme
  • Included sequences
  • Primer list with details
  • Specific Methodologies
  • Ceratocystis
  • Colletotrichum
  • Melampsora
  • Monilinia
  • Mycosphaerella and its anamorphs
  • Phoma and Phoma-like genera
  • Phyllosticta / Guignardia
  • Phytophthora
  • Puccinia
  • Stenocarpella
  • Thecaphora
  • Verticillium

Sequence contents of the Q-bank Fungi database

The Q-bank Fungi database contains various loci for different organism groups. The table below makes it easier to see how much sequence data are available for which locus per organism group. Click on the locus name to see a list of included sequences for that locus in the selected organism group. A matrix overview of all loci per organism group is also available by clicking on the respective "Show all loci for this group in matrix format" hyperlinks.

Q-bank organism group Locus Abbreviation
Ceratocystis Internal transcribed spacers of the nrDNA operon ITS
Translation elongation factor 1-alpha TEF
Show all loci for this group in matrix format
Colletotrichum Internal transcribed spacers of the nrDNA operon ITS
Actin ACT
Beta-tubulin TUB2
Calmodulin CAL
Chitin synthase CHS-1
DNA lyase Apn1 and mating type protein Mat1-like gene APN1/MAT1
Glutamine synthase GS
Glyceraldehyde-3-phosphate dehydrogenase GAPDH
Histone H3 HIS-3
Manganese-superoxide dismutase SOD2
Mating type protein MAT1-2 MAT1-2
Putative DNA lyase APN2
RNA polymerase II second largest subunit RPB2
18S nrDNA small subunit SSU
28S nrDNA large subunit LSU
Show first five loci for this group in matrix format
Show middle five loci for this group in matrix format
Show last five loci for this group in matrix format
Melampsora Internal transcribed spacers of the nrDNA operon ITS
Cytochrome oxidase I COI
28S nrDNA large subunit LSU
Show all loci for this group in matrix format
Monilinia Internal transcribed spacers of the nrDNA operon ITS
Translation elongation factor 1-alpha TEF
Show all loci for this group in matrix format
Mycosphaerella and anamorphs Internal transcribed spacers of the nrDNA operon ITS
Actin ACT
Beta-tubulin TUB2
Calmodulin CAL
RNA polymerase II second largest subunit RPB2
Translation elongation factor 1-alpha TEF
28S nrDNA large subunit LSU
Show first five loci for this group in matrix format
Show last two loci for this group in matrix format
Phoma(-like) genera Internal transcribed spacers of the nrDNA operon ITS
Actin ACT
Beta-tubulin TUB2
Calmodulin CAL
Chitin synthase CHS-1
RNA polymerase II largest subunit RPB1
Translation elongation factor 1-alpha TEF
18S nrDNA small subunit SSU
28S nrDNA large subunit LSU
Show first five loci for this group in matrix format
Show last four loci for this group in matrix format
Phyllosticta/Guignardia Internal transcribed spacers of the nrDNA operon ITS
Actin ACT
Glyceraldehyde-3-phosphate dehydrogenase GAPDH
Translation elongation factor 1-alpha TEF
28S nrDNA large subunit LSU
Show all loci for this group in matrix format
Phytophthora Internal transcribed spacers of the nrDNA operon ITS
Beta-tubulin TUB2
Cytochrome oxidase I COI
Cytochrome oxidase II COII
Intergenic spacer of the nrDNA operon IGS
Ras-related protein-coding gene YPT1
Translation elongation factor 1-alpha TEF
Show first five loci for this group in matrix format
Show last two loci for this group in matrix format
Puccinia Internal transcribed spacers of the nrDNA operon ITS
Intergenic spacer of the nrDNA operon IGS
28S nrDNA large subunit LSU
Show all loci for this group in matrix format
Stenocarpella Internal transcribed spacers of the nrDNA operon ITS
Translation elongation factor 1-alpha TEF
28S nrDNA large subunit LSU
Show all loci for this group in matrix format
Thecaphora Internal transcribed spacers of the nrDNA operon ITS
28S nrDNA large subunit LSU
Show all loci for this group in matrix format
Verticillium Internal transcribed spacers of the nrDNA operon ITS
Actin ACT
Calmodulin CAL
Cytochrome oxidase I COI
Intergenic spacer of the nrDNA operon IGS
28S nrDNA large subunit LSU
Show first three loci for this group in matrix format
Show last three loci for this group in matrix format



Q-bank Home

Program manager:
Dr. Ir. Maikel Aveskamp
Database manager:
Ir. Edu Boer


Arthropods

Curators:
Dr. Jean-Yves Rasplus
Dr. ir. A.J.M. Loomans

Bacteria

Curators:
Dr. Maria Bergsma-Vlami
Dr. Martine Maes
Prof. Dr. Paul de Vos


Fungi

Curators:
Dr. Ulrike Damm
Ir. Marcel van Raak
Dr. Ewald (J.Z.) Groenewald

Nematodes

Curators:
Ir Evelyn van Heese
Dr. Sebastian Kiewnick
Dr. Johannes Hallmann


Phytoplasmas

Curators:
Dr. Mogens Nicolaisen
Prof. Dr. Assunta Bertaccini
Dr. Nicoletta Contaldo

Plants

Curators:
Dr. Johan van Valkenburg
Dr. Leni Duistermaat
Filip Verloove


Viruses & Viroids

Curators:
Dr.ir. René van der Vlugt
Dr. Annelien Roenhorst
Dr. Stephan Winter
Dr. Wulf Menzel

© 2017 Q-bank - All Rights Reserved

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