Pairwise sequence alignment Help Icon

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  • Pairwise sequence alignment parameters
    Minimum similarity to keep results (0-100%): Gap creation penalty (1-100):
    Minimum overlap to keep results (0-100%): Gap extension penalty (1-10):
    Minimum overlap for rating reward (0-100%): Word size (1-256):
    Maximum alignments to display (1-1000): Penalty for a nucleotide mismatch:
    Select sorting mode:
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    Reward for a nucleotide match:
    Select the reference(s) file(s) to be used for the alignment:
    NameLocationStatus#Match(s) found
     http://www.q-bank.eu/http://www.q-bank.eu/Unavailable  000
    Bacteriahttp://www.q-bank.eu/Bacteria/http://www.q-bank.eu/Bacteria/Reachable E:\BioloMICSBasedBio\www.q-bank.eu\Bacteria\Alignments\DB11.24800
    FUNGIhttp://www.q-bank.eu/Fungi/http://www.q-bank.eu/Fungi/Reachable E:\BioloMICSBasedBio\www.q-bank.eu\Fungi\Alignments\DB180.85600
    Arthropodshttp://www.q-bank.eu/Arthropods/http://www.q-bank.eu/Arthropods/Reachable E:\BioloMICSBasedBio\www.q-bank.eu\Arthropods\Alignments\DB41.24800
    Nematodeshttp://www.q-bank.eu/Nematodes/http://www.q-bank.eu/Nematodes/Reachable E:\BioloMICSBasedBio\www.q-bank.eu\Nematodes\Alignments\DB18.79600
    Phytoplhttp://www.q-bank.eu/Phytoplasmas/http://www.q-bank.eu/Phytoplasmas/Reachable E:\BioloMICSBasedBio\www.q-bank.eu\Phytoplasmas\Alignments\DB3.42400
    Plantshttp://www.q-bank.eu/Plants/http://www.q-bank.eu/Plants/Reachable E:\BioloMICSBasedBio\www.q-bank.eu\Plants\Alignments\DB5.59600
    Virushttp://www.q-bank.eu/Virus/http://www.q-bank.eu/Virus/Reachable E:\BioloMICSBasedBio\www.q-bank.eu\Virus\Alignments\DB9.36400
    Non-redundant GenBankhttp://blast.ncbi.nlm.nih.gov/Blast.cgihttp://blast.ncbi.nlm.nih.gov/Blast.cgiReachable nr0014
 
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